buscoplotpy.utils package

Submodules

buscoplotpy.utils.load_busco_fulltable module

buscoplotpy.utils.load_busco_fulltable.load_busco_fulltable(path: str, group: str = '', organism: str = '', genome_version: str = '') → DataFrame

Load the full table generated by BUSCO into a pandas DataFrame.

Parameters:

group (str): The group the organism belongs to. organism (str): The name of the organism. genome_version (str): The version of the genome. path (str): The path to the full table.

Returns:

pd.DataFrame: The loaded full table with busco gene information.

buscoplotpy.utils.load_json_summary module

buscoplotpy.utils.load_json_summary.load_json_summary(path: str) → DataFrame

Load the summary file generated by BUSCO into a pandas DataFrame.

Parameters:

path (str): The path to the BUSCO json summary file.

Returns:

pd.DataFrame: The loaded summary table with busco gene information.

buscoplotpy.utils.load_metaeuk_coordinates module

buscoplotpy.utils.load_metaeuk_coordinates.load_metaeuk_coordinates(path: str) → DataFrame

Load the metaeuk gff coordinates file into a pandas DataFrame.

Parameters:

path (str): The path to the metaeuk coordinates file.

Returns:

pd.DataFrame: The loaded metaeuk coordinates with all informations.

Module contents

class buscoplotpy.utils.MyClass(version)

Bases: object