BUSCO-Plot-Py 0.0.2

Interpreting BUSCO output can be a bit challenging, this because it generates many files and folders containing information about the analysis, especially if you’re not familiar with the specific details provided by the tool.

Buscoplotpy is a library that allows graphical visualization and proper interpretation of completeness analysis results obtained using the BUSCO software in a super-easy and user-friendly manner. By seamlessly integrating with popular data visualization tools such as Matplotlib and Seaborn, Buscoplotpy transforms the raw output generated by BUSCO into clear, insightful plots that facilitate a quick and comprehensive understanding of the genomic assessment.

Functionalities

BUSCO-Plot-Py currently provides these functionalities:

• Construction of a dataframe from BUSCO summary file.

• Construction of a dataframe from BUSCO full_table file.

• Load MetaEuk (gff) coordinates file into a pandas DataFrame.

• Generation of a karyotype plot based on BUSCO’s full_table and a karyotype file.

• Gneneration of a synteny plot based on two BUSCO run output and two karyotype file.

• Generation of a barplot based on multiple BUSCO runs.

• Generation of a density plot for each chromosome with MetaEuk predictions.

Licence

BUSCO-Plot-Py has been licensed under the MIT License

Contents

Introduction

• Installation
• Functionalities
  • BUSCO completeness barplot
  • BUSCO karyotype plot
  • BUSCO synteny plot
• Tutorial

Modules

• buscoplotpy
  • buscoplotpy package